Data download
Deposit Brain Atlas data: GSE128855
Deposit Glioblastoma Atlas data: GSE163120
Deposit PBS/LPS data: GSE157480
Deposit TBB parasite data: GSE212078
Deposit Retina data: GSE232470
Deposit Brain MF replacement data: GSE292830
NOTE: An upload error was observed and corrected in the Gene-cell count matrix data for the "Human GBM citeSeq" dataset.
Date of correction: 2024-10-09
Date of correction: 2024-10-09
WT homeostatic brains
APP/PS1 brains
Conditional Irf8 KO brains
Dissociation induced genes
Human GBM
| # | Sample | Gene-cell count matrix | Cell annotation matrix |
|---|---|---|---|
| 1 | Newly diagnosed GBM: full aggregate | Download | Download |
| 2 | Newly diagnosed GBM: TAM | Download | Download |
| 3 | Recurrent GBM: full aggregate | Download | Download |
| 4 | Recurrent GBM: TAM | Download | Download |
| 5 | Recurrent GBM: Mg-TAM | Download | Download |
| 6 | DC: recurrent + newly diagnosed GBM |
Download
Download |
Download |
Human GBM citeSeq
Mouse transplanted GBM
Mouse GBM citeSeq
Mouse PBS/LPS treated brains
Mouse TBB parasite infection
| # | Sample | Gene-cell count matrix | Cell annotation matrix |
|---|---|---|---|
| 1 | Whole brain naive: Microglia | Download | Download |
| 2 | Whole brain infected: Microglia | Download | Download |
| 3 | Whole brain infected: CD45hi | Download | Download |
| 4 | Choroid Plexus infected | Download | Download |
| 5 | Cured whole brain: 0 days | Download | Download |
| 6 | Cured whole brain: 3 days | Download | Download |
| 7 | Cured whole brain: 7 days | Download | Download |
| 8 | Cured whole brain: 9 days | Download | Download |
| 9 | Cured whole brain: 8 weeks | Download | Download |
Retina nerve crush
Brain macrophage replacement
| # | Sample | Gene-cell count matrix | Cell annotation matrix |
|---|---|---|---|
| 1 | Brain PLX treatment: Full dataset | Download | Download |
| 2 | Brain PLX treatment: Macrophages | Download | Download |
| 3 | Brain Mo-Microglia Engraftment: Full dataset | Download | Download |
| 4 | Brain Mo-Microglia Engraftment: Macrophages | Download | Download |
| 5 | Leptomeninges PLX treatment | Download | Download |
| 6 | MDP- and GMP-Mo-Mglia: Macrophages | Download | Download |
| 7 | FL-Monocytes scRNAseq: Macrophages and precursors | Download | Download |
| 8 | FL-Monocytes snATACseq: Macrophages and precursors | Download | Download |
| 9 | FL-Monocytes and BM-Monocytes scRNAseq | Download | Download |
| 10 | FL-Monocytes and BM-Monocytes snATACseq | Download | Download |
| 11 | FL-Mo-Microglia | Download | Download |
| 12 | Human cord and adult blood monocyte engraftment: Full dataset | Download | Download |
| 13 | Human cord and adult blood monocyte engraftment: Progenitors | Download | Download |
| 14 | Human cord and adult blood monocyte engraftment: Monocytes and macrophages | Download | Download |
| 15 | ROSMAP Human Brain Macrophages | Download | Download |