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Brain Immune Atlas
Datasets
WT Homeostatic brains
Overview
Whole brain
Choroid plexus
Dura mater
Enriched subdural meninges
Pooled macrophage dataset
Full aggregate
APP/PS1 brains
Overview
9M old APP/PS1
Aggregate 16M old APPS/PS1
Conditional Irf8-KO brains
Overview
Whole brain
Choroid plexus
Pooled macrophage dataset
Dissociation-induced genes
Overview
Dura mater
Choroid plexus
Human GBM
Overview
Newly diagnosed: full
Newly diagnosed: TAM
Recurrent: full
Recurrent: TAM
Recurrent: Mg-TAM
DC
Human GBM citeSeq
Overview
TAM: DC monocytes
DC
Mouse GBM
Overview
Full aggregate
DCs
TAM
Mg-TAM
Mouse GBM citeSeq
Overview
TAM: DC monocytes
DC
LPS treatment
Overview
PBS treated
LPS treated
PBS+LPS aggregate
PBS+LPS aggregate: Lymphocytes
TBB infection
Overview
Brain infected+naive
Choroid Plexus infected
Choroid Plexus infected+naive
Infection resolution time series: marophages
Infection resolution time series: microglia
Retina nerve crush
Overview
Retinal myeloid cells
Data download
Contact
UMAP Mouse PBS+LPS treated brains aggregate
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Gene symbol (case sensitive)
Example
Cut off
No cutoff
q1 as min.cutoff - q99 as max.cutoff
Color scale
gray-blue
gold-red
Plot gene expression
Umap plot
Gene symbol:
No gene symbol