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Brain Immune Atlas
Datasets
WT Homeostatic brains
Overview
Whole brain
Choroid plexus
Dura mater
Enriched subdural meninges
Pooled macrophage dataset
Full aggregate
APP/PS1 brains
Overview
9M old APP/PS1
Aggregate 16M old APPS/PS1
Conditional Irf8-KO brains
Overview
Whole brain
Choroid plexus
Pooled macrophage dataset
Dissociation-induced genes
Overview
Dura mater
Choroid plexus
Human GBM
Overview
Newly diagnosed: full
Newly diagnosed: TAM
Recurrent: full
Recurrent: TAM
Recurrent: Mg-TAM
DC
Human GBM citeSeq
Overview
TAM: DC monocytes
DC
Mouse GBM
Overview
Full aggregate
DCs
TAM
Mg-TAM
Mouse GBM citeSeq
Overview
TAM: DC monocytes
DC
LPS treatment
Overview
PBS treated
LPS treated
PBS+LPS aggregate
PBS+LPS aggregate: Lymphocytes
TBB infection
Overview
Brain infected+naive
Choroid Plexus infected
Choroid Plexus infected+naive
Infection resolution time series: marophages
Infection resolution time series: microglia
Retina nerve crush
Overview
Retinal myeloid cells
Data download
Contact
tSNE aggr Irf8 KO macrophage
Processing data. Please be patient ...
Gene symbol (case sensitive)
Example
Cut off
No cutoff
q1 as min.cutoff - q99 as max.cutoff
Color scale
gray-blue
gold-red
Plot gene expression
tSNE plot
Gene symbol:
No gene symbol